PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01033257001
Common NameVIT_08s0007g08750
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family HSF
Protein Properties Length: 131aa    MW: 15233.3 Da    PI: 8.8717
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01033257001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.27.2e-35221132102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl k+y ++ed++++ +isw+++g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv +++         weF ++ F++g++el
  GSVIVT01033257001  22 FLLKTYMLVEDPATDGVISWNSDGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSR---------WEFCNDMFRRGEREL 104
                        9****************************************************************999.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l++i+r+k 
  GSVIVT01033257001 105 LCEIRRRKA 113
                        ******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.0E-5218111IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.2E-3718111IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.9E-3418111IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.6E-192245IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-3122111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-196072IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406185IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-197385IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MEGDHCEKGL LEYVRKSTPP PFLLKTYMLV EDPATDGVIS WNSDGTAFVV WQPAEFARDL  60
LPTLFKHSNF SSFVRQLNTY GFRKVATSRW EFCNDMFRRG ERELLCEIRR RKAWTKQQQQ  120
QQQQQQAPGG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-231711115120Heat shock factor protein 1
5d5u_B1e-221711124129Heat shock factor protein 1
5d5v_B1e-221711124129Heat shock factor protein 1
5d5v_D1e-221711124129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.30380.0cell culture| flower| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3782330.0FQ378233.1 Vitis vinifera clone SS0AEB14YD04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002284216.11e-94PREDICTED: heat stress transcription factor B-3
SwissprotO222302e-55HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLF6HKV61e-94F6HKV6_VITVI; Putative uncharacterized protein
STRINGVIT_08s0007g08750.t014e-94(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.11e-55heat shock transcription factor B3